PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07060g04006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 420aa    MW: 46262.7 Da    PI: 7.1165
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07060g04006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP124.98.6e-39361622126
                       TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssasece 74 
                               +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++akpai+el+++            s+s+a+ + 
  Niben101Scf07060g04006.1  36 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKPAIDELAELpawkptlgsvsvSASAANTS- 119
                               79**************************************************************44444433322211111111. PP

                       TCP  75 aesssssasnsssg...kaaksaa.kskksqksaasalnlakesrakarararert 126
                                            +   +++++++ + +++++ ++ + n a  s+++a a+ r++t
  Niben101Scf07060g04006.1 120 -------------NleqDQSQDENfTFHQENATTSLFDNAAGPSNKRAMATLRNET 162
                               .............1111222222212333333333333333344444444444433 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.8E-3136221IPR005333Transcription factor, TCP
PROSITE profilePS5136934.5433896IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MGDGQHQNHR TTSRLGLRST VGEIVEVQGG HIVRSTGRKD RHSKVCTAKG PRDRRVRLSA  60
HTAIQFYDVQ DRLGYDRPSK AVDWLIKKAK PAIDELAELP AWKPTLGSVS VSASAANTSN  120
LEQDQSQDEN FTFHQENATT SLFDNAAGPS NKRAMATLRN ETNTSGSFLP PSLESDAIAD  180
TIKSFFPMGS STATNSSPMP FQSFHQETNN MLSRTSSQNQ DLKLSLQFQD PILLHHQNQQ  240
AQHQHQHQHQ TNNHREELQA HVGHFTPLGF DSSGCWSSMH QQQQPVGRVQ RLASWNDNRD  300
TTAQGGGYLF NSQPGQPPLL QQLFGGQNQF YTQRGPLQSS NTPSVRAWID PTSSAIAIAS  360
ADQAVLPMYH HPSTIPPGYG FASEIGGFSG FRIPARIQGE EEEHDGISDK PSSASSDSRH
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00009PBMTransfer from 929286Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009795084.10.0PREDICTED: transcription factor TCP4-like
RefseqXP_016487618.10.0PREDICTED: transcription factor TCP4-like
SwissprotQ8LPR51e-103TCP4_ARATH; Transcription factor TCP4
TrEMBLM4PM760.0M4PM76_9SOLA; TCP trancription factor
STRINGPGSC0003DMT4000322680.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32072349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.34e-91TCP family protein